PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00016528-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 266aa    MW: 29302.7 Da    PI: 9.1872
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00016528-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-08173213954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  WALNUT_00016528-RA 173 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 213
                         699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-14165223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-14168222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-14170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-6174213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.44E-6187218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDVDMLKSST GDHMEVMTMM MQMEERLPEF CDSFYNASTY PSGIEFSSGS TSCSIATIPP  60
VFHSAPINNL APPTLINIQP SSLPFIGNPN IDQEPLNTPP LQAHVVSERF RNASVDALSL  120
RNSSEKKNSS MAAMREMIFR IAAMQPIHID PESVKPPKRR NVKISKDPQS VAARHRRERI  180
SERIRILQRL VPGGTKMDTA SMLDEAIHYV KFLKKQVQTL EQAGANRTLQ GGGFPGMITS  240
SVSNANYSSL VKACQPAQMV LGPMGL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043535.13e-91PREDICTED: transcription factor HEC2-like
SwissprotQ9SND41e-50HEC2_ARATH; Transcription factor HEC2
TrEMBLV4SF231e-89V4SF23_9R
STRINGPOPTR_0007s10950.14e-81(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.12e-45bHLH family protein